WebPackages removed with Bioconductor 3.3 release. No packages were removed with this release. 17 packages were marked as deprecated, to be removed in the next release. WebDec 30, 2024 · TSRchitect 1.20.0:: DESCRIPTION. TSRchitect allows the user to efficiently identify the putative promoter (the transcription start region, or TSR) from a variety of TSS …

TSRchitect Introduction

WebTSRchitect allows the user to efficiently identify the putative promoter (the transcription start region, or TSR) from a variety of TSS profiling data types, including both single-end … WebTSRchitect User’s Guide TSRchitect User’s Guide R. Taylor Raborn and Volker P. Brendel Department of Biology, Indiana University First edition 25 January 2024 Updated 27 June … dictionary\u0027s 8s

TSRchitect 1.20.0 – Promoter Identification from large-scale TSS ...

WebOct 27, 2024 · TSRchitect allows the user to efficiently identify the putative promoter (the transcription start region, or TSR) from a variety of TSS profiling data types, including both … WebIt allows the user to efficiently identify the putative promoter from a variety of TSS profiling data types, including both single-end as well as paired-end. In addition, it provides the ability to import aligned EST and cDNA data. Along with the coordiantes of identified TSRs, TSRchitect also calculates the width, abundance and two forms of the Shape Index, and … WebJun 1, 2024 · Collectively, GoSTRIPES and TSRchitect represent an end-to-end pipeline for TSS identification that we term TSRbuild (Supplemental Methods). To determine a read number threshold for STRIPE-seq analysis, we assessed the promoter-proximal fraction of TSSs, with a promoter definition of −250 to +100 bp relative to annotated gene starts. city dump anchorage alaska